PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10035854
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YB
Protein Properties Length: 214aa    MW: 22995.3 Da    PI: 6.5842
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10035854genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB173.52.2e-5429122295
        NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                  +eqdrflPianvsrimkk lPanakisk+ake+vqecvsefisfvt+easd+cqrekrktingddllwa++tlGf++yv plk+yl kyr++e+
  Lus10035854  29 KEQDRFLPIANVSRIMKKSLPANAKISKEAKESVQECVSEFISFVTGEASDRCQREKRKTINGDDLLWAMTTLGFDNYVGPLKAYLGKYRDTEE 122
                  89*****************************************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-5025124IPR009072Histone-fold
SuperFamilySSF471134.04E-3831125IPR009072Histone-fold
PfamPF008084.6E-273498IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.3E-186280No hitNo description
PROSITE patternPS0068506581IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.3E-188199No hitNo description
PRINTSPR006151.3E-18100118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MAGKRYQQKG ISHTGSPTSS DGGSSSNNKE QDRFLPIANV SRIMKKSLPA NAKISKEAKE  60
SVQECVSEFI SFVTGEASDR CQREKRKTIN GDDLLWAMTT LGFDNYVGPL KAYLGKYRDT  120
EEGDTDDDVV VEGVFDDSTI NSTAFIGGAD HHHFYGEVGG PRLTHHLNSH NGGATSLVYT  180
LGVGGQYPPA VNGANGGMAS AAHHVHSDRI HQW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-4729119292Transcription factor HapC (Eurofung)
4g92_B3e-4729119292Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310018.27e-64hypothetical protein POPTR_0007s06480g
TrEMBLB9HFX28e-64B9HFX2_POPTR; Uncharacterized protein
STRINGPOPTR_0007s06480.12e-63(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.12e-57nuclear factor Y, subunit B3